Relaxed molecular clocks for dating historical plant dispersal events, springerlink

  • Relaxed molecular clocks for dating historical plant dispersal events.
  • Molecular Phylogenetics and Evolution.
  • Taxon sampling and genetic markers In the first analysis for the Orchidaceae family, we used the matrix compiled by Ramirez et al.
  • Evolutionary Biology Centre, Uppsala University.
  • However, it is essential to critically evaluate the impact of methodology and other parameters taxon sampling, fossil calibrations, sequence regions on the reliability of results.

Relaxed molecular clocks for dating historical plant dispersal events

Neighbor-joining tree of fossil species in red and extant species. These different biogeographic methods all have some limitations. These regions have strong floristic affinities with each other, suggesting a former connection via an Eocene pan-African rain forest. Trends in Ecology and Evolution.

Species, voucher information, and GenBank accession for all sequences included in this study. Continuous and tractable models for the variation of evolutionary rates. Diversity and Distributions. Please review our Terms and Conditions of Use and check box below to share full-text version of article.

Evolutionary timescales can be estimated from genetic data using molecular clocks. Although the methodology and assumptions implemented in each molecular dating method can be readily compared, our knowledge of how time estimates are influenced by the choice of method is still poor. Accurate model selection of relaxed molecular clocks in Bayesian phylogenetics.

Acknowledgements

Based on the median ages from the relaxed clock Fig. The two nodes where the strict and the relaxed clock yield different ages are the crown group of Illigera but even in this case confidence intervals overlap and the crown group of Monimiaceae. Molecular phylogenies and divergence dates were estimated using a Bayesian relaxed uncorrelated molecular clock assumption accounting for both calibration and phylogenetic uncertainties.

  1. Biogeography and Ecology of Southern Africa.
  2. Poor fossil calibration coverage of certain lineages when more fossil calibrations are available.
  3. The maximum credibility tree for the fossil-calibrated relaxed molecular clock analysis of the family Orchidaceae, using the same matrix and calibration points as Ramirez et al.

Previous Figure Next Figure. We argue that the four cases Kurtziana spp. We also ran an analysis without the nucleotide data in order to sample from the joint prior distribution and to assess the decisiveness of the data. Because the actual age of B.

Acknowledgments

Characters that were unchanged among all species or for which complete data were unavailable were omitted. It is worth noting that the single fossil used by Ramirez et al. Specifically, Kubitzki hypothesized that H.

Molecular Clocks Relaxed Variant

Relaxed molecular clocks for dating historical plant dispersal events

However, the resolution within the genus was poor, mainly distinguishing two subclades. In fact, games many studies have revealed extreme heterogeneity of nucleotide substitution rates over time. Secondary calibration with a single fixed age when fossil calibration is not available for the focal lineage. Within his broadly conceived species G.

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The Guineo-Congolian and East African regions are geographically isolated by a c. We did this because the oldest fossil used by Ramirez et al. You are viewing the new article page.

Bayesian random local clocks, or one rate to rule them all. Moreover, two new orchid fossils described in have not yet been incorporated in a molecular dating analysis. In addition to choosing a different dating method, doha we conduct a new analysis on an expanded taxon sampling by adding two internal calibration points in the orchid phylogeny.

Intercontinental and intracontinental biogeography patterns and methods

To date, our analysis provides the best evidence to support a pivotal role for Antarctica in the possible origin and early diversification of a Southern Hemisphere genus. The Malagasy species of Isolona form a highly supported, nested clade. Phylogenetic biogeography.

The full text of this article hosted at iucr. Originally, a constant rate of sequence evolution was assumed, but soon it became evident that many data sets do not obey the constant rate assumption of a strict molecular clock. Phylogenetic test of the molecular clock and linearized trees.

First, the distributions of modern Beauprea species are mostly in the mountainous regions of New Caledonia, away from watercourses and coastal environments where water dispersal would be possible. Our results also provide important insights into the absolute time scale of these events, guardians of especially for the origin of the East African endemic lineages. Ages obtained for the biogeographically interesting divergence events under a strict clock model versus a relaxed clock model are shown in Fig. Maps a to d on the right show the respective dispersal events in the chronogram.

Australian Systematic Botany

We first reviewed the presence of Beauprea -type pollen in the fossil records and analyzed the relationship of a selection of fossil taxa with extant genera within the Proteaceae. This provides evidence for the increasingly probable hypothesis that East African rain forests have been ecologically stable during those times. This effectively encloses a range of possible ages from c. Author information Article notes Copyright and License information Disclaimer.

For plant material, we thank B. International Journal of Plant Sciences. Acknowledgements For plant material, dating korean we thank B. An exceptional ability to establish following prolonged oceanic dispersal may be largely responsible for the evolutionary persistence of this small clade. We show that the presence of Beauprea through transoceanic dispersal is implausible.

Many intercontinental disjunct patterns are particular to either the northern hemisphere or the southern hemisphere. There are five endemic species of Nothofagus in New Caledonia. This period also witnessed the closure of the Tethys sea when the African plate collided with the Eurasian one c.

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Lastly, by incorporating extinct taxa into the Beauprea phylogenetic tree, we were able to reconstruct the ancient geographical distribution of this genus. Here we use a similar approach on a rain forest-restricted clade with disjunct West-Central and East African distributions, which provides a way to test the above hypotheses. Expansion and reconnection would have allowed new lineages to spread from West-Central Africa to East Africa or vice versa. Tools Request permission Export citation Add to favorites Track citation.

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